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1. WinClean
You can bookmark any key in the Registry and access the registry key with a single mouse click. Clear Recent Documents. Clear the Windows Explorer MRU Lists. So you can create a set of Registry keys that you frequently access eliminating the need to manually open Regedit.
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Platform: Windows 95, Windows NT, Windows 2000, Windows XP, Windows 98, Windows ME
Vendor: Chandra Lesmana

2. WipeOut Pro
Customization features include: adding additional directories you want to wipe, additional registry keys you want to clear, cookies you want to keep, wipe files in the recycle bin, clear the swap file, choose the number of patterns to write to free space and registry entries before clearing, set the thread priority of the free disk space wipe, and delete locked files.
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Platform: Windows 2000, Windows XP
Vendor: Complete E-Commerce

4. BlackBytes Registry for .NET
BlackBytes Registry for.NET provides classes that manipulate the system registry. Much of the registry consists of nested containers known as RegistryRootKey and RegistryKey. An application uses the OpenSubKey method to open a key and the CreateSubKey method to create a key.
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Vendor: BlackBytes Software & Consultancy, Ltd.

5. Registry Defragmentation (Site License)
Windows registry is its core, constantly modifying and growing in size. Thus registry quickly loses its linear structure which results in increase of application response time and registry access time. Registry defragmentation performs physical defragmentation of the Windows registry file.
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Language: N/A
Vendor: Elcor Software

6. Registry Help

Registry Check and Repair Most of the commonly used sections of your windows registry will be checked here. Here are the registry modification records when you use Registry Help to change the windows registry. All the modification will be recorded when you remove key entries in Check and Repair, edit or delete key entries in Tweak List, edit or delete key entries in Reg Browser, and delete key entries in Search.

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Platform: Windows NT, Windows 2000, Windows XP, Windows Server 2003
Vendor: YourSoft Inc

7. Registry Defragmentation (Personal License)
Windows registry is its core, constantly modifying and growing in size. Thus registry quickly loses its linear structure which results in increase of application response time and registry access time. Registry defragmentation performs physical defragmentation of the Windows registry file.
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Language: N/A
Vendor: Elcor Software

8. Active Registry Monitor
Active Registry Monitor (ARM) is an utility designed for analysing the changes made to Windows Registry - by making the snapshots of it and keeping them in the browsable database. It is also possible to exclude any keys of the Registry from compare results.
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Platform: Windows 95, Windows NT, Windows 2000, Windows XP, Windows 98, Windows ME, Windows Server 2003
Vendor: SmartLine Inc

9. MyMappeR
This is mapped tcp port for LAN/Internet users with firewall. It doesn't require installation and will not add new registry keys at Windows registry database at first use.
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Platform: Windows 3.1x, Windows 95, Windows 2000, Windows XP, Windows 98, Windows ME
Vendor: Nickolay Asenov

11. KLS Backup 2005 Professional
KLS Backup 2005 Professional is a powerfull backup software for Windows, designed to backup any type of data (local files and folders, network locations, FTP servers, registry keys, MySQL databases, application profiles and windows settings).
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Platform: Windows 95, Windows NT, Windows 2000, Windows XP, Windows 98, Windows ME, Windows Server 2003
Vendor: KLS Soft